gannet/ripley/tests-ATLASimprovements to Bayesian indirect likelihood (BIL) algorithm (mh$alg="aux"):
Ecrit for 2nd order phase transition when k > 4factor to inflate the variance of the surrogate modelVmax1,Vmax2 for $\beta < \beta_{crit}$ and $\beta > \beta_{crit}$, respectivelyoption mh$sort to impose an ordering constraint on the component means
removed OpenMP options from Makevars to fix problems with RcppArmadillo. Users should edit ~/.R/Makevars to enabel multithreading.
no longer wait for mh$auxiliary iterations before beginning to update $\beta$ using the exchange algorithm or ABC. For $\beta > \beta_{crit}$, this increased the propensity of the Gibbs sampler to become stuck in a suboptimal local mode, far from the true parameter value.
added jss.bst and jss.cls to .Rbuildignore
removed the deprecated slices parameter from mcmcPotts()
some minor edits to the Roxygen documentation
added ORCID to DESCRIPTION
removed the R package PottsUtils from Suggested packages; added mcmcse
moved README-chunkname.png images from root directory to inst/images
Functions getNeighbors(), getEdges(), getBlocks() contributed by Dai Feng. These are currently exact copies of the equivalent functions in the R package PottsUtils. The reason for duplicating this code is to avoid picking up dependencies on miscF, R2jags, BRugs, etc.
Added new option to swNoData and mcmcPottsNoData to initialise the labels using either random or deterministic values. This can be useful when comparing the convergence of the Swendsen-Wang and Gibbs sampling algorithms to known distributions (e.g. when $\beta$=0 or $\infty$)
Additional documentation in README.md with an example of usage
Fixed compile errors on SPARC Solaris
Fixed compile warnings from icpc (Intel Parallel Studio XE) on Linux
Added bayesImageS_init.cpp to call R_registerRoutines and R_useDynamicSymbols